For team selection games the LP approach works great but does not dominate, as described in the OP. I've found it to work less well over the years and I wouldn't be surprised if the fantasy game vendors have been explicitly adding countermeasures - things like temporary wildcards, round-specific rules, trading limits and velocities, etc all mess with your LP constraints. Not that you couldn't also code that up but it's time consuming. You end up needing to follow the competition closely anyway and using your model as an advisor to spot "good deals" in the data.
edit: a few times I have also back tested my models vs the odds offered by the bookies (for the margin prediction games). Unsurprisingly the bookies have better models than me. Could be just using the bookies odds as the pick is a better approach.