Any permanent damage done to Facebook's reputation will purely be because they overvalued the IPO, overstated earnings, bought out other internet companies at inflated valuations pre-IPO, and burned those who bought at the inflated initial valuation.
As to whether the trading system damaged confidence in Facebook - it's not always possible to get the deal you want on a stock-market, and anyone placing a limit order should know that they might get a vastly different price than the one they expected - there are disclaimers in trading systems specifically for this situation. Trading is stopped all the time by circuit breakers (see Zynga that same day for example), depends on both willing buyers and sellers at a given price, and of course depends on the trading systems not going down for whatever reason. If you're buying as a long term investment of a stock that you believe in this won't affect you. If you're speculating, particularly short-term, you should recognise that the casino is rigged against small investors - the stock market is not, and never will be, rational, fair, or efficient; it's just the least worst option we have. However I don't believe that lack of access to the stock or prices on the first day of trading has anything to do with the current price ($31 last time I looked) - that's just down to a bubble deflating and confidence evaporating as people start asking questions about the true valuation.
Frankly I think this sort of talk of the technical issues is really a way of avoiding talking about why people bought Facebook at the initial irrational PE/price which (IMHO) has farther to fall before it becomes a reasonable valuation based on their projected earnings. That's the real issue here, but one which raises hard questions about the very high valuation of many social media companies like Instagram, Facebook etc.