The Fourier transform of a discrete signal repeats in the frequency domain. For example, [1, -1, 1] could be a sine wave with the exact half of the sampling frequency going from 1 to -1 back to 1 once .... Or it could be a sine wave with double the sampling frequency that is actually going from 1 to -1 to 1 to -1 all within the gap of the first 2 samples. Or it could be 3x the sampling frequency, 4x the sampling frequency, etc. The solution is to only keep the part of the transform that is below the Nyquist limit, because we don't have a sampling rate accurate enough to measure the higher frequencies, so just assuming they dont exist. This also means that if the source signal WAS in fact 4x the sampling frequency, we will see a spike at 1/2 the sampling frequency in the fourier transform, and when we re-create the signal, it will be completely wrong.
So unless you have analog hardware for measuring the Fourier transform (or are working purely in a non-physical mathematical domain, like "i have a sine wave" which can be perfectly represented), you are naturally going to be taking discrete samples of a signal to measure the Fourier transform, which means you are going to be losing any part of the signal that doesn't adhere to sampling rates.
Because my engineering courses were so heavily focused on digital signal processing, when I hear "fourier transform" i immediately think of "discrete fourier transform" and loss is immediately applicable.
Remember that it is an integral transform. Basically, any data on a set of vanishing measure can be lost or corrupted. Unfortunately it can even be the case the deviation around some points is unbounded.
This means that sure, the Fourier transform itself isn't lossy (garbage in, garbage out) but Fourier transforms would be used in contexts where loss are introduced. If I have a real perfect square wave, and I want to a take a fourier transform of it, the sampling is going to introduce loss, so to associate sampling losses with the transform itself is fair. Real square wave ran through a DFT program on my computer is going to spit out an approximation of a square wave -- loss.
But also, the question this is all responding to was effectively "why would engineers associate Fourier transforms with loss" and the answer is simply "because the techniques used in calculating most Fourier transforms are going to inherently put a frequency limit and anything beyond that will be lost or show up as an artifact". Engineers work with real world constraints and tend to be hyper aware of those constraints even if they often don't matter.