npm is a fairly standard package manager, much like many others, pretty good even.
I don't know of anyone who says that package managers and source control solve the same problems. They both happen to use the word and concept of "version" but to mean different things. Yes, some projects vendor in their dependencies into their source control system, but they must either manually verify package version compatibility or use a package manager like npm to help them do it. And vendoring doesn't work for actual packages published to the package repo. If they vendored dependencies then every dependency would be duplicated always, defeating the very purpose of a package manager!