The article explicitly states, one paragraph later than the beginning, that "about half of that is just plain wrong".
The author also explains the hypersonic missiles are nothing new, that they are old tech, and that the real threat would be maneuverable hypersonic missiles, which the Khinzal is not. The Khinzal is ballistic.
So when the author writes of the threat of maneuverable hypersonics, and you say "The non-ballistic variety that Russia claimed was unstoppable [...]", you are both speaking of different kinds of weapons with different capabilities. The Khinzal is old tech for which there are counters. The author is speaking of newer tech for which there are fewer counters.