These are all group-level findings, meaning they aren't true for every individual. You can do a study and find that there is a statistically significant difference in mean X between two samples – autistic vs control or schizophrenic vs control. But pretty much always, although there is a statistically significant difference in the mean, the two samples overlap – which is consistent with this being a factor which only explains some of the cases.
> It seems the ECS system is the principal driving mechanism behind both conditions.
Claims like that ("the principal driving mechanism behind psychiatric diagnosis X is biological difference Y") have been made many times before, and few of them have gone anywhere. I'd be surprised if this one turns out differently.
Both autism and schizophrenia are bundles of different conditions which we've grouped together on the basis of nothing more than overlapping systems. Two people can both have "autism", yet at a biological level they've got two completely different things. The same applies for two people with "schizophrenia". This is why a number of researchers have been arguing that diagnosis-centric research is a dead-end.
I wouldn't be surprised if ECS system issues (or any other system in the brain) turn out to be the cause of some cases of autism and some cases of schizophrenia; but there will be other cases of both in which it isn't the "principal driving mechanism" at all.