"We have successfully tested that after unloading AppleFWOHCI.kext the current tools won't work anymore."
If that's true then an option for those who need to use FW/TB devices is to remove the drivers from the system folder to prevent loading at startup and kextload/kextunload on demand.
The following named drivers are present in "/System/Library/Extensions/" :
IOFireWireAVC.kext IOFireWireFamily.kext //(The AppleFWOHCI.kext mentioned above is included here) IOFireWireIP.kext IOFireWireSBP2.kext IOFireWireSerialBusProtocolTransport.kext
IOThunderboltFamily.kext AppleThunderboltDPAdapters.kext AppleThunderboltEDMService.kext AppleThunderboltNHI.kext AppleThunderboltPCIAdapters.kext AppleThunderboltUTDM.kext
Lion even disables Firewire DMA when the screen is locked if you are running Filevault, or if you have an EFI password.