It's a bit of a difficult concept to wrap our head around because we've been taught to associate "number symbols" and names with "things" since we were toddlers, but they absolutely aren't the same thing.
There's no such thing as "three", other than a categorization that we, as humans, apply to model the physical phenomenon.
We've developed language and symbols over time to more precisely model the things we observe, but it's important to remember that our symbols are different from the things they are invented to represent.
It's really hard to separate this abstract concept from our observed reality when they are so tightly coupled - the idea of "three dimensional space" is a model we've constructed to categorize and represent, in a convenient way, observed phenomenon that is too difficult to talk about in other terms.
We didn't "discover" that there are three dimensions, for example. We developed language and a mental framework for categorizing space in such a way that we could more easily reason about it and communicate our reasoning effectively with others.
We didn't "discover" Ohm's law. We created a set of units, names and concepts that would allow us to model the relationship in an analytic way, between other concepts such as current, voltage and resistance. Ohm's law isn't not a fundamental law of nature. Above all else, it's a series of struggles with language to describe things we observe. "Ohm" as a unit of resistance, "Voltage", "Amperage" - all of this was invented in order to be able to reason about things we were seeing, and it seems to be a good mental model and tool for getting things done, but it is very different than the actual reality.
We didn't "discover" the number three - we created the concept of numbers and refined their meaning over time. For a very long time, in most civilizations there wasn't a concept of "zero" in number symbols. We needed a way to communicate that concept though, so invented a symbol to represent it.
Number systems and the symbols that represent them have varied wildly throughout human history, and there appears to be a neurological attachment in the human brain that associates quantity with physicality (specifically fingers) [1] that makes grokking this concept especially difficult. When we become sophisticated enough that using our fingers wasn't sufficient to reason and communicate, we started using bone tally marks as a quantity representation - but all of these things, fingers, tally marks, glyphs - are just symbols that humans have created over time to imperfectly model physical phenomena.
It's no different than any other sort of naming. We look at differences between birds, and attach a symbol of "hawk" to one, and "eagle" to another. There's no such thing as "hawk" or "eagle" in nature, these are human invented symbols that help us categorize and communicate in a short-hand way, differences between species we observe. Numbers are the same, but we've also invented a bunch of rules for manipulating those symbols to communicate more advanced concepts: addition, subtraction, etc...
Now it's true, of course, that we discover new things all the time. Frequently we need to invent new ways of describing it. We discovered, by observing the stars, that planets follow an elliptical orbit. We couldn't describe that well using the tools we had, so invented Calculus.
[1] https://en.wikipedia.org/wiki/History_of_ancient_numeral_sys...