Any chance that you might open source the software and provide a hosting solution instead? Are there other such OSS platforms?
As for open source solutions, there is OJS (http://pkp.sfu.ca/?q=ojs). It's heart is in the right place, but it's an unfortunately clumsy product that lacks many of important features we're looking to add.
http://publishing.umich.edu/2012/01/05/more-legislative/ http://www.opencongress.org/contact_congress_letters/24541-H...
At the risk of being reductive, I generally believe publicly funded research ought to be publicly available (or at least available at a price that's reasonable for the average person).