IIRC Star Trek style replicators and transporters get around that limitation by freezing time inside the assembly field.
But we can't freeze time, and even if we could I don't see how that would help get rid of the energy of combustion either.
Essentially, a bit like a miniature black hole created on demand to dispose of present-day physics.
Turns out the answer is genocide (DS9) and screwing around with VR and time travel (Voyager). Pretty realistic.
( https://en.wikipedia.org/wiki/Michael_Okuda#Work_in_Star_Tre... )