The first amendment of the constitution is written so that each part is dependent on the previous parts.
Religion is protected because religion is what you think and believe.
Next speech is protected. It’s listed after religion because what you say is determined by what you think.
Freedom of the press protects what you say widely.
Next the right to assemble is protected because what you write in the press may inspire groups to form to petition the government for change which is the final item.
When people in Northern Ireland burn flags, they’re burning the flag of the Irish Republic, but the people they say they hate are Catholics.
And the privileged position of religion comes from a time where the punishment for not following the local approved worldview was anything up to a long torturous death, which didn’t tend to happen for other kinds of beliefs.
Religious belief on the other hand does have external effects. Your belief / disbelief is directly perceived by God, and God takes actions based on your belief.
In other words, normal belief is a state, religious belief is an action. So, whereas challenging someones normal belief is an act of knowledge sharing, challenging a persons religious belief could get them struck by lightening.
It seems we should see large numbers of lightning strikes then. And as societies become more secular, the number of such strikes should be increasing; but I’m unaware of any such trend.