> gives us a false sense of confidence in how much we know about the biological world
A false sense of confidence could make people vulnerable to bold false claims, which might lead to poor consumer choices and poor policy choices.
Beyond that, the approach seems really wrong-headed. Popular science education has a successful approach when you want people to understand the limitations of a model: you hook people with a fun headline of "COOL NEWS, THINGS ARE MUCH WEIRDER THAN YOU THINK!" You teach forward from the oversimplified model.
You aren't going to reach many people with a negative, moralizing message that people need to go backwards and give up a model that has given them insight. "Oh, we should never have given you this, you're not smart enough for it, you're going to make a mess."
The sad thing is that the information conveyed here is really cool, and it could easily be framed in a fun way! Instead, it's presented in a way that sends the message, "Look, you need to understand how dumb and dangerous it was for you to think you had any insight into this."
> It's finally dawning on us that the cell is not a machine
I really, really, really don't understand the sense of moralistic fear infusing this whole presentation. Reading the piece and watching the video, I feel like I'm reading and watching a religious sermon on the spiritual dangers of materialism instead of a piece of popular education to help the public have a better-informed understanding of science.