Exactly. Technical measures are important, but if someone wants to play a game or do something that's been banned on Apple's stores and finds a site that claims to have an installer (which is actually malware) with instructions to disable Gatekeeper or SIP or what not, social engineering can work. Their goal is to do the thing they wanted to do, probably not thinking of security in the meanwhile. Popup alerts are going to be interpreted as something to get rid of so they can do the thing.

It's a difficult balance. Power users, engineers, developers - we can (usually) tell when warnings need to be heeded. People who use their devices to achieve a goal without really understanding or caring about what's happening usually won't.