Organizing means you want more power, more control.
Also, there are many dimensions to liking or disliking your workplace. You may love the product your working on. You may really like your colleagues. You may also love the office environment. However, you may dislike the amount of vacation days, the lack of ability to work part time or the lack of paternal leave.
Workplaces have literally hundreds of properties, each of which you may like or dislike. So organizing to tweak those you dislike (while, on balance, you actually still like most properties) is very normal.