- it have a unique concept of transclusion, notes can have tags and calling tags allow transclusion of all matching notes in the current one, a very nice composition idea, especially since you choose between transclusion and link;
- notes are created, with a companion app saved, full-text searched with a very simple UI, better than similar small wikis like Zim;
- it's js/web nature is a turn off, but might be interesting for many since this days is an easy to share media, easy to serve locally (see for instance widdler);
- it's simple but still a bit featured, like attachment support, image rendering in-line, LaTeX math rendering etc and it's moderately easy to mold with web stuff.
Personally I consider both Tiddly Wiki and Zim wiki two best example of modern apps well done with all limits of modern apps in general compared to classic systems. All other desktop tools for notes I know are far, far, far less interesting then those.
- org-roam to create/manage notes
- latexpreview in org-mode buffers
- org-transclusion
Only the last is not ideal, since it work but with sometimes indenting issues etc.