Not quite. tptacek says "Most people would say that reducing the threshold to discover security bugs is a good thing." I think that restating what tptacek said earlier, "mostly orthoganal", to "largely doesn't matter", loses some of the meaning.
One way of seeing it is that it's mostly orthaganal at a level of all software out there, but that for those who make a serious effort to be secure, there is a lot of benefit to being open source.
There's Linus's Law, "given enough eyeballs, all bugs are shallow". I think if the maintainers of Linux didn't meaningfully address security concerns, it would just mean they were doing a bit better at whack-a-mole. You see this in popular open source projects like WordPress.
So I think that's why a reader might think tptacek's two comments don't jibe with each other. If you are given a choice between an open source and a closed source application, you wouldn't just assume one is more secure than another. However, if you were starting off to make a secure system, it would be a good idea to make it open source.