The original version of Donnie Darko was “downgraded” from INXS to Echo and The Bunnymen, among others. The director’s cut replaced or repurposed several tracks. The original was better, a little too much tinkering, I think.
https://en.wikipedia.org/wiki/1984_(For_the_Love_of_Big_Brot...
Seems more of a creative dispute than royalty issue, though.