>> crew would probably be awake at all times for repairs etc
If the ship requires human crews to conduct regular repairs, then the ship probably won't last long enough to get where it is going. A ship that is going to last for 10,000 years will need to be built like an Egyptian pyramid, solid enough to last forever and be functional despite millennia of erosion. Putting someone on that pyramid to conduct repairs might sound good, but after 10,000 years those repairs would become just another source of erosion. The activities of that one person would wear down any system with which they interact.