Sorry, I didn't mean to imply that my comment should apply literally to all cases. I am just pointing out to parent that particles can be indistinguishable in principle, and not just as a technological limitation of our measurements. Moreover, there is an experimental way to tell the difference between distinguishable and indistinguishable, roughly based on the difference between probabilities and amplitudes. To dig deeper one must look at the details, e.g. in Feynman's lectures vol. III.

The statement that protons are indistinguishable is not strictly correct either, because protons have a spin. Protons with the same spin are indistinguishable, but you can tell apart protons with different spin. The spin of protons can only assume two values, so effectively there are two classes of protons, indistinguishable within the class.

In your specific case, it is clearly false that the probability of having one particle in one place is 200%. However, my statement still holds for expectations, and you end up with an expected two particles in one place. In the indistinguishable case, you must compute expectations based on amplitudes, not probabilities.