I can't imagine working without feature flags. Being able to enable new features in particular deployment rings (canary, dogfood, various production rings or regions), or per users / user groups, enabling gradually (percentage) and so on, is invaluable. I really can't overstate this.
Heck, we went as far as using feature flags for risky bugfixes even.
We had also internal tools to easily work with and track feature flags. A downside is that although normally you'd want to remove old feature flags that become obsolete, this hasn't been done very often.
What I suggested and we started doing was to tag the feature flags with the name of the author and the date at which they were added, and the same for the config updates, and usually ticket number and title for both case. This did help with tracking obsolescence, but obviously there was still a need to plan and do the actual work. Automating this process further was out of the question, due to the high risks involved.
Edit: added the last paragraph.