I do not understand this argument.
I'm going use the word magic for whatever you're calling this non-"materialistic" spiritual explanation. I'm not trying to be a jackass, that's truly the best word I can find for it. I don't think magic is a bad thing, I just don't think you should summon magic until you need to.
Magic is not an explanation, it's a non-explanation. It's non-falsifiable (blah-bity Popper, yeah yeah).
Our adeptness at manipulating matter is not the origin of wanting (at least mine) to find a 'materialistic' explanation for something. It's the desire to have a predictive (read, useful) model of that thing, even if the model is not complete. Once you poke deep enough at any model you will find that there is some hand-wavy "magic" at the bottom. That is, there is some part that we don't know yet, either because we can't do the math, because we can't measure due to difficulty of experiment, or because of fundamental bounds where maybe you might be justified in starting to invoke some magic.
Despite best selling books about some quantum mysticism bullshit, I have yet to see an inkling of evidence for invoking magic for consciousness. From a physics perspective, biological systems are freaking hard, we have no reason to expect them to crack easily. And that's without us (physicists) understanding nearly enough about biology!