Sure, but if you're conducting the survey from a submarine you're 1) very nearly as detectable (the sonar is pinging like mad, China likely have hydrophones throughout the region) and 2) as noted, your consts, complications, and vulnerabilties have gone up markedly.
Given circumstances, something like a drone ship might be a better option. Slightly less detectable, cheap, and can be deployed in quantity if desired.
https://youtube.com/watch?v=9XoTAvcKgOE
Toward the end of the video (beginning about 4:30) the VP of ocean mapping talks about bathymetry as a major future mission. I note that whilst the surveyor craft has an international-orange sail as the other droneships, the body is battleship grey. I suspect there may be alternatively-liveried mission sails as well.
More on that here: https://www.saildrone.com/tag/bathymetry
Connan seems to be USN Ret.:
https://www.crunchbase.com/person/brian-connon
In fact, I'd put reasonable money on that being a chief mission consideration for the technology. Drop a bunch of these in bad weather --- they'll make good coverage, and it's going to be difficult as heck to get out, spot them, and take countermeasures.
Give it a grey paint-job and maybe drop some radar-absorbing material on it, and they'll be fairly stealthy.