> Isn't this the mine complex that is flooding due to melting permafrost?
The entrance hall was flooded in 2017, the seeds were not endangered. The entrance has been upgraded since.
> It seems insane putting this stuff in an icy hole in the ground on a warming planet.
As it is customary, all the concerns you come up with in first 5 minutes after reading an article on the Internet were likely considered by people working on the project.