That's like saying that tests introduce a new kind of bug -- behaviours that aren't explored at all -- and that that serious issue (and it is, indeed, extremely serious) should dissuade you from writing and running tests.
All software quality tools are imperfect, and even in the very few special cases where software can be realistically verified end-to-end, the behaviour of the actual system -- which also depends on hardware that can never be fully assured -- is not guaranteed.
The only question that matters when evaluating a software quality tool is: does it improve the software's quality for a cost that is lower than achieving the same improvement by other means? In other words, does it save us money and/or pain? For TLA+, the answer in many cases is absolutely yes. I.e. there is no better/cheaper/easier way to gain the same benefit.