Don't have actual research references, but I always remember notes I write by hand better than the ones I type. I suspect it is a neuro-motor function of some sort. When things are recalled the brain perhaps recalls the movement of the fingers and that aids. It is like smell perhaps for emotional things -- very effective.
While I agree with you overall with regards to pen & paper's magical properties, I'd disagree with you on this particular point solely because I created a web-based app last year to solve this exact problem for myself. I cannot do problem-solving on a computer and have to write out variables and formulas on paper but I find making lists on paper a chore, especially since I have bad handwriting. My text app helps address that because it is just like a text-editor with tabs and code-folding. Workflowy.com is another alternative and it offers a lot more features.
I love pen and paper for hashing out ideas and concepts but I will never go back when it comes to lists.