My personal take: transparent displays are a lazy trick of film makers who overestimate the importance of characters in science fiction, and underestimate the importance of setting.
A proper real-world use of transparency would be Augmented Reality - i.e. overlaying contextual UIs on top of the real world the user sees through the glass/hologram.
Characters are always more important than setting. You can tell a compelling story with a character alone in a room, but without any characters even an interesting setting has nothing to say.
Not among sci-fi fans. There are lots of classic and beloved scifi books that are all about the world and setting and technology where the characters are 2d cardboard cut outs that only exist as an excuse to move the story from set piece to set piece.
Good sci-fi writers dont go lazy on characters and actually develop them.
Most literary genres are defined by the flavor of character exploration you do. Any character-focused story you want, you can find a genre for it. Science fiction is defined as speculative exploration of interactions between people and hypothetical advancements of science and technology. If you laser-focus on the characters, you lose what makes the genre interesting and distinct from all others.
That's not to say that characters aren't important. But, in the kind of sci-fi I like, technologies and societies and institutions become "characters" themselves, and need to be treated with equal importance.
Given that we are talking about extremely popular show, maybe they do actually know what they are doing.
Ghost In The Shell does this very well, especially the series.
I can't think which episodes, but there's are a couple scenes where detective Miller is looking at his phone in 2D mode, and he says, "Go 3D." In one scene, he interacts with the 3D projection, reorienting it. In another scene, invoking the 3D display makes it possible for everyone in the room to discuss the projection.
I'd love to know how these effects were done. And, when can I have one of those phones?