Alyssa clearly explained how avoiding fixed-function hardware means they can cram more shaders in which means they can increase performance; we have no idea, at this stage, whether this ends up being a net gain or a net loss for, say a Vulkan app. And we probably never will, because we don't have an "AGX-but-it-has-this-stuff-and-fewer-shader-cores-in-the-same-silicon-area" to compare with. And it doesn't matter. In the end OpenGL and Vulkan apps will run fine.
If we ever end up with empirical evidence that these design choices significantly hurt real-world OpenGL and Vulkan workloads in ways which cannot be worked around, you can start complaining about Apple. Until then, there is absolutely no indication that this will be a problem, never mind zero evidence for your conspiracy theory that it was a deliberate attempt by Apple to sabotage other APIs.