If you read/write very rarely and speak very often, these kinds of misspellings may seem pretty natural. But if you write a lot - perhaps even a lot more than you speak - they may stick out like a sore thumb and your brain might flag them as highly unnatural and a potential sign of hidden meaning. (I'm probably like 99.5% writing 0.5% speaking, myself, and I bet many people reading this are, too.)
Then combine it with one of the most mysterious and analyzed crime stories in US history, with a cryptic, megalomaniacal serial killer who loved to use ciphers and symbology to toy with the press, public, and police. I can definitely see why people might suspect something deeper to the spelling, but the null hypothesis always needs to be carefully considered, first.
And a side note: does anyone know what the trends over the decades are like for less "hodgepodge-y" languages, like Spanish and German? They seem to have rules for pronouncing based on spelling and spelling based on pronunciation that are a lot more predictable and consistent than English's. I would guess that the popularization of spellcheck/autocorrect might be less significant for such languages, though I'd also love to be proven wrong.