In the Google announcement, they say that ITA’s existing contracts will be honored & have extended contracts through to 2016
This deal was announced a long time ago. Hipmunk will have already planned for this situation
First they're doing Youtube Live -> Justin.tv etc.
Then better flight search -> Hipmunk
Oh jeez. I love the future.
Further, if I were doing a talent acquisition, I can't think of many people I'd want more than the reddit team, and Hipmunk is currently pretty much made up of the early reddit team. Of course, Steve is already rich (by some definition of rich), so probably isn't desperate to sell for merely "talent acquisition" money, but Google can afford to stretch the meaning of talent acquisition, and have done so in the past to get really interesting people.
Also, saying "all they need is a GUI" is vastly underrating the importance of the GUI. I can imagine an Android app with a Hipmunk style UI being really powerful. Sometimes you want to find the perfect balance of price and schedule, and sometimes you want to do that while in the middle of a meeting or in the cab on your way to your hotel so you know when you're flying again, or whatever.
And, to get specific about YC-related acquisitions, Google docs had a spreadsheet when they acquired Zenter. All they needed was a GUI, but they acquired a two-man company that had a few tens of thousands of lines of code. Probably a talent acquisition (and a smart one, since Robby and Wayne are awesome), but nonetheless, an acquisition.
Anyway, I agree that Google will definitely be building this into the search user interface. But, when Google moves into an area they don't just do the search interface. Maps has loads of entry-points into it, including non-search oriented use cases, and Google made several acquisitions and developed a bunch of stuff internally to make Maps happen.
Google is not known for revolutionary UI.