I view the phrase "the system worked" as a red flag indicating that things went wrong in a way they shouldn't, not a positive thing. A successful outcome doesn't necessarily indicate things are fine.
A canonical example is the Space Shuttle boosters. The O-rings were supposed to block all the hot gases, but there was some gas leakage and erosion of the O-rings. Nothing bad happened and officials said this showed there was a sufficient safety factor. In other words, the system worked. They kept launching shuttles until an O-ring eroded all the way through and Challenger blew up. They should have recognized that erosion shouldn't have happened at all; successful launches despite erosion were an indication that things were dangerously wrong, not an indication that the system was working.
(I hope I haven't gone too far on a metaphorical tangent here.)
Reference: Feynman's report on Challenger: https://science.ksc.nasa.gov/shuttle/missions/51-l/docs/roge...