They really did something new with the Wii controls, landed a huge hit and Sony/Microsoft are only recently getting back with similar controls (Kinect, Move). I think they deserve a point here.
The Wii is still the best selling console and the DS the best selling handheld(by far!). Perhaps it's irrelevant from a HN pov, but certainly not from a familiy/kids/recreational gaming pov.
And the major games from Nintendo itself (Mario Galaxy, Zelda....) are rock solid, high quality games.
Unfortunately the source for that article is buried behind a registration wall.
If you are pushing out shovelware, I'm sure that's profitable, anything else, not so much. Sega in particular has had some really bad luck on the platform.
If you look at the big picture, you will find that Nintendo has been in decline for a long time, and that their questionable business practices will hurt them in the long run. Let's all come back in ten more years and see if I'm right.