Any scientist can tell you that it's hard to keep up with the literature, and it's very likely that many of them spoke out against make without reading the papers. I was taught as an undergrad that they don't work. Many of these things are passed down uncritically.
This issue demonstrates that we need to improve science communication. Many scientists and public health professionals declared outright that make don't work. This shows that they are either unfamiliarity with the totality of the literature or that they feel the need to give definitive statements. When some people provided evidence in favour of masks, some of them switched to saying that make are needed by medical professionals and that improper usage can increase your risk. A better approach would be to acknowledge that there is uncertainty at that in their view the evidence against masks outweighs that in favour. If they took this approach, it wouldn't seem like they just flip flopped when they started recommending make. Also, it's not hard to train people to use them, and condescending to treat people as being too stupid to wear them.