I learned a lot from this article (discovered on HN I think):
What's so hard about PDF text extraction? https://www.filingdb.com/pdf-text-extraction
In a nutshell, PDF is fundamentally different than MS Word: it's a standard for visual layout, without notions of paragraphs or even words.
As OP said, it doesn't mean the tool is useless. It could quite often come handy for myself.