io.js was separate from Node for a while, had a few core passionate fans, but didn't really see widespread adoption. It inspired node.js maintainers to do better though and eventually the two projects merged together and Node became better for it.
JS itself has been around for 24 years now and has gradually evolved over the years with new keywords and functionalities to keep up with the times. Node has done the same, and can easily adopt many of the things that Deno has.