As to if Stripe should "allow" this; while I think $8,200 is too much for repeat transactions, I don't think repeat identical transactions is that odd in general. Even within a couple of seconds (e.g. 99 cent in-app-purchases). The only thing that surprises me is that there is no upper limit/sanity check.
You could ask them to waive some of the fee, but some of it might be their costs.