Thankfully device-side microchips that interface with USB chargers come with overvoltage protection. For example: http://www.ti.com/lit/ds/symlink/tps65983b.pdf
Devices which charge from wall chargers have to undergo testing for power glitches to obtain FCC certification. I forget the name of the test. Somebody else will know what I'm talking about!
They are usually sporadic and no surge protection test will provide a guarantee against them.
Basically, they seem to do a pretty good job isolating high- and low-voltage circuits. As far as I understand it, it is air-gapped, and physically impossible to induce dangerously high voltage on the device side without some mechanical failure that bridges the gap.
On the other hand there are documented cases of USB-C PD between two device-ish things (ie. things that can be both power source and sink) failing in variously spectacular ways.
https://www.youtube.com/watch?v=SjeZB12985c
Maybe that's an example of what you mean?
https://docs.google.com/spreadsheets/d/1vnpEXfo2HCGADdd9G2x9...