The slicer will generate a command that says go from point (x1, y1, z1) to point (x2, y2, z2) with speed f, but it doesn't say anything about acceleration, or how to transition into the next move. A very simplistic controller will use a trapezoidal ramp profile where it will ramp up to the programmed feed rate at a fixed acceleration, then stay at the programmed feed, then ramp down in time to reach the end point. However, if the move was a very short line or arc as part of a large surface, the machine doesn't need to reach 0 speed before starting the next move. A smarter controller will 'look ahead' to predict the next few move and plan the motion of the machine to eliminate jerkiness or stopping.
The slicer may tell the machine what acceleration to use, but that's really just setting a parameter in the machine controller, and isn't settable per-move.
This isn't as critical for 3D printers as it is for big, heavy milling machines. Nevertheless, you can do clever things like trying to compensate for vibration, or speeding up or slowing down the extruder motor based on the pressure of the plastic in the nozzle.
This isn't to say Prusa is switching just to do better motion planning, it sounds like that isn't a primary goal, but I'm trying to illustrate there is a lot more room for intelligence than 'just wiggling some IO'.