I think high speed rail is great, but it doesn't seem to work well on routes longer then 3-500 miles, if for no other reason than the construction cost is too high.
3 of the air routes that cover this journey are in the top 11 busiest domestic routes in the world (#3 Sapporo to Tokyo-Haneda;#4 Fukuoka to Tokyo-Haneda;#11 Tokyo-Haneda to Osaka-Itami).
The highest ranking US domestic route is #30 (JFK-LAX), though by distance it's almost 3X (2827.2 miles).