net send is what tipped my school off to a group of students having deeper access to the network than they should. Turns out 'net send * "Hiya Man!"' is not very subtle. Before that, people were only sending to individual users, but apparently someone didn't think through the consequences of sending to * - it took about 2-3 minutes for the IT manager to show up. Weirdly, it was still possible _after_ that - a friend of mine experimented with using a tool to change the sender address (his IT teacher knew, but just told him "If you're going to do this, don't get caught"), so getting a "Message from GOD" wasn't uncommon.
They apparently missed that another group had already created their own domain admin account, and didn't notice that until some weeks after the net send incident (I think it lead to them paying closer attention for anything unusual happening). I do think they brought it on themselves to some extent - having a domain admin password of "school" (easily shoulder-surfed), later "<name of school with an o replaced with a 0>7" (ophcrack made short work of that one, using cached credentials), and a VNC password of "vnc" (server installed on every machine in the school), is asking for trouble.
Fortunately they weren't malicious, just curious (the most "damage" they did was changing a single pixel in the desktop background of all users to see if it was possible) - they even slipped a note under the IT Admin's door with the current domain admin password on it, but apparently they either didn't see it or didn't act on it. Given they had write access to every user's network drive, it could have been far worse. It ended up being a lesson in OPSEC as well - getting logged on a rogue domain admin account using a device called "<family name> USB" is a bit of a red flag.
I think the punishment was pretty fair though (despite some initial ranting from senior leadership about suspensions and getting the police involved - cooler heads from the deputy leadership and IT technicians prevailed) - helping the IT technicians out for a week, which amounted to cataloguing hardware (chasing down services tags), and re-wiring a couple of the computer rooms.