The problem is a lot of manufacturing equipment is either not networked, or not networkable. A lot of equipment relies on USB interfaces to load/store programs. Disabling USB ports across the board is not practical.
And with some of the crazy hardware[1] out there for retrofitting antique equipment with modern functionality; blanket encryption is not always possible either. The cited USB emulator requires that the USB stick be formatted into hundreds of minuscule FAT partitions, simulating floppy disks images and all the documentation comes in one language: Engrish. After that the machines will only load programs that follow a certain naming convention/format/ect...
[1]http://www.gotekemulator.com/
So the choices for many organizations are;
a) upgrade dozens of custom pieces manufacturing equipment so that they're securely networkable at astronomical cost (if it's even possible).
b) Air-gap all the old scary stuff running on ancient OSs & proprietary PLC drivers from god-knows-where and only talk to them via USB/direct interfaces and worry about them when they break.