Probably limited resources. The ones that do get hit are the big ones like Super Mario 64 Online [1] . Instead of the hacks themselves they seem focus on youtube quite a bit. I know a lot of Super Mario 64 emulation and emulation of other Nintendo properties is often DMCAed on that platform. [2] discussion [3]
[1] https://motherboard.vice.com/en_us/article/43axqp/nintendo-s...
[2] https://www.youtube.com/watch?v=AKtaFU2ky9E&t=192s
[3] https://www.ign.com/boards/threads/nintendo-is-abusing-youtu...