Aaron Swartz did it first with http://jottit.com/
There is also a HTTPS-Everywhere ruleset for it in the current development branch.
For those reasons alone, I would always choose jottit over tidypub...
There is no good reason that this site should require javascript. Nothing it does is improved by the javascript requirement.
Also, a good number of security conscious folks who run Firefox also run noscript. This means that they can't use the site without explicitly whitelisting the site's javascript, which reduces it's immediate usability.
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In fact I can't think of any reason how the two cases are in any way the same (I could see your point if we were talking about something like activex).