I don't assume that the stuff is forever beyond physical explaination, and like I said we can perform science on the behavior of it. But ultimately the scientific method will always conclude that its ultimately an illusion and that there is only the word green, or the recognition of 532nm light. A word doesn't even need be assigned to it, its witnessed either way.
I use color as an example because its very distant and theoretically could be many different ways (e.g. your experience of green may not be made of the same stuff my green is). However geometry seems far less arbitrary. Visualizing a square is more specific, the way the lines relate to space in the 2D plane if misrepresented will be wrong. I doubt we visualize such things with 100% accuracy, but we must visualize them to a certain common accuracy, and thats important, common. Basically, as far as experiencing the visual concept of a square, we all experience roughly the same object in our conscious experience. Thats where things can be studied a bit, because the behavior of consciousness given certain logic is likely absolute.