I wonder how much Intel knew of this "bug" and went ahead and shipped with it because of the speed increases.
It should be noted though that at the time neither sharing processors with strangers / across trust boundaries nor executing arbitrary crap in a VM were common activities. Memory protection and such were mostly viewed as a technique to increase reliability, not to provide actual security.
Accordingly how much they knew about the nature of it and their ability to predict is really the question and IMO kinda a hard one to know (unless there are some memos out there) / judge.
Granted in the age of little to no consideration given to security in so many places .... I wouldn't be surprised by anything.