They sure have!

https://adblockplus.org/blog/attention-noscript-users

To be clear, they intentionally interfered with Adblock Plus for ages, causing a cat and mouse war between the two. Eventually they went too far and there was an apology issued. It will probably be hard to actually find much information about this as I imagine the noscript developers want to keep their reputation cleaner. As far as I know the extension no longer attempts to interfere with Adblock extensions.