What would you recommend instead of Jira?
The Jira we use at work has gone overboard. There is too many ways to specify and people are confused. For example, we have "blocks" (B cannot be finished without A closed) and "follows" (B cannot be started without A closed).
JIRA promises armchair management, but I've yet to see those tools actually work. That being said, you may be a better JIRA user than anyone I know. JIRA has always be promoted as a tool from the top down, never from the bottom up.