But I am aware that in twenty years from now none of these tools might be alive anymore. I keep exporting and backing up my data because of this. And my backlog of "to be migrated" grows longer and longer.
For now I find it more convenient to use a tool with a sleak interface that offer all the features I need in a "personal wiki" / note taking app: inserting screenshots into notes (this is a killer feature for me), beutifully rendering my markdown text, fulltext search, nested folders (or tags in Bear lingo), syncing across all my devices. The alternative is too cumbersome: For instance Emacs/Org + rgrep + Dropbox for syncing + git + a bunch of .emacs entries that allow me to insert screenshots.
Edit: Forgot to mention IdeaNote. Used it when I tried to replace my iPhone with a BlackBerry device. Excellent app. I could create super long and time stamped journal entries / logs / notes on the superb keyboard of the BB device in seconds (never got used to typing on a touchscreen). But eventually the BB got abandonware itself. And so the app. Luckily I could pay 50$ to export my 3k notes. Migrated them successfully to Evernote with a bit of Ruby script.
Edit 2: Lesson learned for me: No tool is going to be there forever. Need to have a clear concept for how I will keep my data independent from tools du jour.