For anything more technical I use Quiver which supports MarkDown, code with pretty printing, LaTex and diagram markup, but it doesn't have an iPad editor (just reader).
From various Apple support forum requests it seems that a lot of people were having similar - but also a number were totally unaffected.
Any suggestions?
tell application "Notes" to get body of every note
You might of course want to build a little around this — save the results, etc.Same goes for the Markdown. Maybe some people find Markdown codes scattered all over the place "beautiful", but I don't.
Bear also doesn't handle images very well, at least on iOS (I don't remember how it behaves on the Mac). Images are rendered full width. You can't create nice grids of images like you can with Evernote.
As others have mentioned, organization can feel like a bit of a pain sometimes with how you have to organize with tags, but it hasn’t really hindered me as much as I thought it would.