The author of the article had left a default whitelist on the production box that whitelisted /dev/random as being readable. The attacker compiled a program (took a test I'm guessing) that included /dev/random. The author found out based on ip and sheer luck that the attacker was a user of the system that he had corresponded with previously.
The reason I summarized this is because I wasn't totally clear on what codeboff.in was from the article. It makes sense how an attack like this could happen. The author seems to really know his stuff and the attack vector really was a small oversight. It's pretty unsettling to me, though, how persistent/insane this attacker seems.