In a difference equation x(t+1) = f(x(t),u(t)), u causes changes to x and not the other way around
In a difference equation x(t+1) = f(x(t),u(t)), u causes changes to x and not the other way around
It may simply be a predictor of x, as in the 'barometer readings may precede and imply a storm but not cause one' example given by others above.
For differential or non-differential equations, they're still just describing how something is and not the causality behind it. It's always possible that the equation is merely a result of hidden variables and there is no casual relationship between any two points of the solution in any meaningful sense.
It gets even murkier when you think of statements like "Hitler coming into power caused world war 2". There are so many things going on in that system that it couldn't possibly be true (e.g. if you change Hitler out for another person maybe world war 2 still happens), but works as a plausible line of causal reasoning for a lot of people.